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2019

  1. Characterization of New Oligosaccharides Obtained by An Enzymatic Cleavage of the Exopolysaccharide Produced by the Deep-Sea Bacterium Alteromonas infernus Using its Cell Extract.
    Akoumany K, Zykwinska A, Sinquin C, Marchand L, Fanuel M, Ropartz D, Rogniaux H, Pipelier M, Delbarre-Ladrat C, Colliec-Jouault S.
    Molecules. 2019 Sep 22;24(19). pii: E3441. doi: 10.3390/molecules24193441.

  2. Cigarette smoke induces overexpression of active human cathepsin S in lungs from current smokers with or without COPD.
    Andrault PM, Schamberger AC, Chazeirat T, Sizaret D, Renault J, Staab-Weijnitz CA, Hennen E, Petit-Courty A, Wartenberg M, Saidi A, Baranek T, Guyetant S, Courty Y, Eickelberg O, Lalmanach G, Lecaille F.
    Am J Physiol Lung Cell Mol Physiol. 2019 Nov 1;317(5):L625-L638. doi: 10.1152/ajplung.00061.

  3. A proliferation-inducing ligand-mediated anti-inflammatory response of astrocytes in multiple sclerosis.
    Baert L, Benkhoucha M, Popa N, Ahmed MC, Manfroi B, Boutonnat J, Sturm N, Raguenez G, Tessier M, Casez O, Marignier R, Ahmadi M, Broisat A, Ghezzi C, Rivat C, Sonrier C, Hahne M, Baeten D, Vives RR, Lortat-Jacob H, Marche PN, Schneider P, Lassmann HP, Boucraut J, Lalive PH, Huard B.
    Ann Neurol. 2019 Mar;85(3):406-420. doi: 10.1002/ana.25415. 

  4. Cancer cells induce immune escape via glycocalyx changes controlled by the telomeric protein TRF2.
    Cherfils-Vicini J, Iltis C, Cervera L, Pisano S, Croce O, Sadouni N, Győrffy B, Collet R, Renault VM, Rey-Millet M, Leonetti C, Zizza P, Allain F, Ghiringhelli F, Soubeiran N, Shkreli M, Vivier E, Biroccio A, Gilson E.
    EMBO J. 2019 Jun 3;38(11). pii: e100012. doi: 10.15252/embj.2018100012.

  5. MatrixDB: integration of new data with a focus on glycosaminoglycan interactions.
    Clerc O, Deniaud M, Vallet SD, Naba A, Rivet A, Perez S, Thierry-Mieg N, Ricard-Blum S.
    Nucleic Acids Res. 2019 Jan 8;47(D1):D376-D381. doi: 10.1093/nar/gky1035.

  6. A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space.
    Clerc O, Mariethoz J, Rivet A, Lisacek F, Pérez S, Ricard-Blum S.
    Glycobiology. 2019 Jan 1;29(1):36-44. doi: 10.1093/glycob/cwy084.

  7. Substrate binding mode and catalytic mechanism of human heparan sulfate d-glucuronyl C5 epimerase.
    Debarnot C, Monneau YR, Roig-Zamboni V, Delauzun V, Le Narvor C, Richard E, Hénault J, Goulet A, Fadel F, Vivès RR, Priem B, Bonnaffé D, Lortat-Jacob H, Bourne Y.
    Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6760-6765. doi: 10.1073/pnas.1818333116. 

  8. The Emerging Roles of Heparan Sulfate 3-O-Sulfotransferases in Cancer.
    Denys A, Allain F.
    Front Oncol. 2019 Jun 12;9:507. doi: 10.3389/fonc.2019.00507

  9. Effect of modified di- and trisaccharides on hyaluronidase activity assessed by capillary electrophoresis-based enzymatic assay.
    Fayad S, Ayela B, Chat C, Morin P, Lopin-Bon C, Nehmé R.
    Carbohydr Res. 2019 Feb 23;475:56-64. doi: 10.1016/j.carres.2019.02.006. 

  10. Heparan sulfate in chronic kidney diseases: Exploring the role of 3-O-sulfation.
    Ferreras L, Moles A, Situmorang GR, El Masri R, Wilson IL, Cooke K, Thompson E, Kusche-Gullberg M, Vivès RR, Sheerin NS, Ali S.
    Biochim Biophys Acta Gen Subj. 2019 Feb 19;1863(5):839-848. doi: 10.1016/j.bbagen.2019.02.009. 

  11. Structures and interactions of syndecans.
    Gondelaud F, Ricard-Blum S.
    FEBS J. 2019 Aug;286(15):2994-3007. doi: 10.1111/febs.14828.

  12. Advancing Solutions to the Carbohydrate Sequencing Challenge.
    Gray CJ, Migas LG, Barran PE, Pagel K, Seeberger PH, Eyers CE, Boons GJ, Pohl NLB, Compagnon I, Widmalm G, Flitsch SL.
    J Am Chem Soc. 2019 Sep 18;141(37):14463-14479. doi: 10.1021/jacs.9b06406.

  13. The role of heparan sulfate maturation in cancer: a focus on the 3O-sulfation and the enigmatic 3O-sulfotransferases (HS3STs).
    Gulberti S, Mao X, Bui C, Fournel-Gigleux S.
    Semin Cancer Biol. 2019 Nov 8. pii: S1044-579X(19)30266-4. doi: 10.1016/j.semcancer.2019.10.009.

  14. Structural and Energetic Effects of O2'-Ribose Methylation of Protonated Pyrimidine Nucleosides.
    He CC, Hamlow LA, Zhu Y, Nei YW, Fan L, McNary CP, Maître P, Steinmetz V, Schindler B, Compagnon I, Armentrout PB, Rodgers MT.
    J Am Soc Mass Spectrom. 2019 Nov;30(11):2318-2334. doi: 10.1007/s13361-019-02300-9. 

  15. On-the-Fly Femtosecond Action Spectroscopy of Charged Cyanine Dyes: Electronic Structure versus Geometry.
    Hervé M, Brédy R, Karras G, Concina B, Brown J, Allouche AR, Lépine F, Compagnon I.
    J Phys Chem Lett. 2019 May 2;10(9):2300-2305. doi: 10.1021/acs.jpclett.9b00435.

  16. Involvement of thapsigargin- and cyclopiazonic acid-sensitive pumps in the rescue of TMEM165-associated glycosylation defects by Mn2.
    Houdou M, Lebredonchel E, Garat A, Duvet S, Legrand D, Decool V, Klein A, Ouzzine M, Gasnier B, Potelle S, Foulquier F.
    FASEB J. 2019 Feb;33(2):2669-2679. doi: 10.1096/fj.201800387R.

  17. Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.
    IMEx Consortium Curators, Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, Porras P.
    Nat Commun. 2019 Jan 2;10(1):10. doi: 10.1038/s41467-018-07709-6.

  18. The Accumulation of Heparan Sulfate S-Domains in Kidney Transthyretin Deposits Accelerates Fibril Formation and Promotes Cytotoxicity.
    Kameyama H, Uchimura K, Yamashita T, Kuwabara K, Mizuguchi M, Hung SC, Okuhira K, Masuda T, Kosugi T, Ohgita T, Saito H, Ando Y, Nishitsuji K.
    Am J Pathol. 2019 Feb;189(2):308-319. doi: 10.1016/j.ajpath.2018.09.015.

  19. What's up in the proteolysis landscape? A lively blend of classical concepts and pioneering innovations.
    Lalmanach G.
    Biochimie. 2019 Nov;166:1-3. doi: 10.1016/j.biochi.2019.10.001

  20. Processing and Maturation of Cathepsin C Zymogen: A Biochemical and Molecular Modeling Analysis.
    Lamort AS, Hamon Y, Czaplewski C, Gieldon A, Seren S, Coquet L, Lecaille F, Lesner A, Lalmanach G, Gauthier F, Jenne D, Korkmaz B.
    Int J Mol Sci. 2019 Sep 25;20(19). pii: E4747. doi: 10.3390/ijms20194747.

  21. Rat cathepsin K: Enzymatic specificity and regulation of its collagenolytic activity.
    Lecaille F, Chazeirat T, Bojarski KK, Renault J, Saidi A, Prasad VGNV, Samsonov S, Lalmanach G.
    Biochim Biophys Acta Proteins Proteom. 2019 Nov 15:140318. doi: 10.1016/j.bbapap.2019.140318

  22. Viral degradation of marine bacterial exopolysaccharides.
    Lelchat F, Mocaer PY, Ojima T, Michel G, Sarthou G, Bucciarelli E, Cérantola S, Colliec-Jouault S, Boisset C, Baudoux AC.
    FEMS Microbiol Ecol. 2019 Jul 1;95(7). pii: fiz079. doi: 10.1093/femsec/fiz079.

  23. A Bioinformatics View of Glycan⁻Virus Interactions.
    Le Mercier P, Mariethoz J, Lascano-Maillard J, Bonnardel F, Imberty A, Ricard-Blum S, Lisacek F.
    Viruses. 2019 Apr 23;11(4). pii: E374. doi: 10.3390/v11040374. Review.

  24. A comparative analysis of secreted protein disulfide isomerases from the tropical co-endemic parasites Schistosoma mansoni and Leishmania major.
    Miele AE, Badaoui S, Maugliani L, Salza R, Boumis G, Chichiarelli S, Duclos B, Ricard-Blum S.
    Sci Rep. 2019 Jul 2;9(1):9568. doi: 10.1038/s41598-019-45709-8.

  25. GlcNAc6ST3 is a keratan sulfate sulfotransferase for the protein-tyrosine phosphatase PTPRZ in the adult brain.
    Narentuya, Takeda-Uchimura Y, Foyez T, Zhang Z, Akama TO, Yagi H, Kato K, Komatsu Y, Kadomatsu K, Uchimura K.
    Sci Rep. 2019 Mar 13;9(1):4387. doi: 10.1038/s41598-019-40901-2.

  26. Marine Polysaccharide-Collagen Coatings on Ti6Al4V Alloy Formed by Self-Assembly.
    Norris K, Mishukova OI, Zykwinska A, Colliec-Jouault S, Sinquin C, Koptioug A, Cuenot S, Kerns JG, Surmeneva MA, Surmenev RA, Douglas TEL.
    Micromachines (Basel). 2019 Jan 19;10(1). pii: E68. doi: 10.3390/mi10010068.

  27. A novel amphipathic cell-penetrating peptide based on the N-terminal glycosaminoglycan binding region of human apolipoprotein E.
    Ohgita T, Takechi-Haraya Y, Nadai R, Kotani M, Tamura Y, Nishikiori K, Nishitsuji K, Uchimura K, Hasegawa K, Sakai-Kato K, Akaji K, Saito H.
    Biochim Biophys Acta Biomembr. 2019 Mar 1;1861(3):541-549. doi: 10.1016/j.bbamem.2018.12.010.

  28. Loss of endothelial sulfatase-1 after experimental sepsis attenuates subsequent pulmonary inflammatory responses.
    Oshima K, Han X, Ouyang Y, El Masri R, Yang Y, Haeger SM, McMurtry SA, Lane TC, Davizon-Castillo P, Zhang F, Yue X, Vivès RR, Linhardt RJ, Schmidt EP.
    Am J Physiol Lung Cell Mol Physiol. 2019 Nov 1;317(5):L667-L677. doi: 10.1152/ajplung.00175.2019

  29. Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction.
    Potthoff J, Bojarski KK, Kohut G, Lipska AG, Liwo A, Kessler E, Ricard-Blum S, Samsonov SA.
    Int J Mol Sci. 2019 Oct 10;20(20). pii: E5021. doi: 10.3390/ijms20205021.

  30. A microscale double labelling of GAG oligosaccharides compatible with enzymatic treatment and mass spectrometry.
    Przybylski C, Bonnet V, Vivès RR.
    Chem Commun (Camb). 2019 Apr 4;55(29):4182-4185. doi: 10.1039/c9cc00254e.

  31. Constitutive activation of EGFR is associated with tumor progression and plays a prominent role in malignant phenotype of chondrosarcoma.
    Qin J, Shaukat I, Mainard D, Netter P, Barré L, Ouzzine M.
    Oncotarget. 2019 May 7;10(34):3166-3182. doi: 10.18632/oncotarget.26899. 

  32. Fragments generated upon extracellular matrix remodeling: Biological regulators and potential drugs.
    Ricard-Blum S, Vallet SD.
    Matrix Biol. 2019 Jan;75-76:170-189. doi: 10.1016/j.matbio.2017.11.005.

  33. Extracellular matrix contribution to skin wound re-epithelialization.
    Rousselle P, Montmasson M, Garnier C.
    Matrix Biol. 2019 Jan;75-76:12-26. doi: 10.1016/j.matbio.2018.01.002.

  34. Laminin 332 in cancer: When the extracellular matrix turns signals from cell anchorage to cell movement.
    Rousselle P, Scoazec JY.
    Semin Cancer Biol. 2019 Oct 19. pii: S1044-579X(19)30122-1. doi: 10.1016/j.semcancer.

  35. Re-epithelialization of adult skin wounds: Cellular mechanisms and therapeutic strategies.
    Rousselle P, Braye F, Dayan G.
    Adv Drug Deliv Rev. 2019 Jun;146:344-365. doi: 10.1016/j.addr.2018.06.019. 

  36. Curcumin inhibits the TGF-β1-dependent differentiation of lung fibroblasts via PPARγ-driven upregulation of cathepsins B and L.
    Saidi A, Kasabova M, Vanderlynden L, Wartenberg M, Kara-Ali GH, Marc D, Lecaille F, Lalmanach G.
    Sci Rep. 2019 Jan 24;9(1):491. doi: 10.1038/s41598-018-36858-3

  37. Glycan sulfation patterns define autophagy flux at axon tip via PTPRσ-cortactin axis.
    Sakamoto K, Ozaki T, Ko YC, Tsai CF, Gong Y, Morozumi M, Ishikawa Y, Uchimura K, Nadanaka S, Kitagawa H, Zulueta MML, Bandaru A, Tamura JI, Hung SC, Kadomatsu K.
    Nat Chem Biol. 2019 Jul;15(7):699-709. doi: 10.1038/s41589-019-0274-x. 

  38. Spectroscopic diagnostic for the ring-size of carbohydrates in the gas phase: furanose and pyranose forms of GalNAc.
    Schindler B, Legentil L, Allouche AR, Ferrières V, Compagnon I.
    Phys Chem Chem Phys. 2019 Jun 21;21(23):12460-12467. doi: 10.1039/c8cp04082f.

  39. Expression and purification of recombinant extracellular sulfatase HSulf-2 allows deciphering of enzyme sub-domain coordinated role for the binding and 6-O-desulfation of heparan sulfate.
    Seffouh A, El Masri R, Makshakova O, Gout E, Hassoun ZEO, Andrieu JP, Lortat-Jacob H, Vivès RR.
    Cell Mol Life Sci. 2019 Feb 20. doi: 10.1007/s00018-019-03027-2. 

  40. Mass spectrometry analysis of the human endosulfatase Hsulf-2.
    Seffouh I, Przybylski C, Seffouh A, El Masri R, Vivès RR, Gonnet F, Daniel R.
    Biochem Biophys Rep. 2019 Feb 7;18:100617. doi: 10.1016/j.bbrep.2019.01.010. 

  41. Lysyl oxidases: from enzyme activity to extracellular matrix cross-links.
    Vallet SD, Ricard-Blum S.
    Essays Biochem. 2019 Sep 13;63(3):349-364. doi: 10.1042/EBC20180050.

  42. A Three-Dimensional Model of Human Lysyl Oxidase, a Cross-Linking Enzyme.
    Vallet SD, Guéroult M, Belloy N, Dauchez M, Ricard-Blum S.
    ACS Omega. 2019 May 14;4(5):8495-8505. doi: 10.1021/acsomega.9b00317.

  43. Imaging of extracellular cathepsin S activity by a selective near infrared fluorescence substrate-based probe.
    Wartenberg M, Saidi A, Galibert M, Joulin-Giet A, Burlaud-Gaillard J, Lecaille F, Scott CJ, Aucagne V, Delmas AF, Lalmanach G.
    Biochimie. 2019 Nov;166:84-93. doi: 10.1016/j.biochi.2019.03.013. 

  44. Deep-sea Hydrothermal Vent Bacteria as a Source of Glycosaminoglycan-Mimetic Exopolysaccharides.
    Zykwinska A, Marchand L, Bonnetot S, Sinquin C, Colliec-Jouault S, Delbarre-Ladrat C.
    Molecules. 2019 May 1;24(9). pii: E1703. doi: 10.3390/molecules24091703.

  45. Microcarriers Based on Glycosaminoglycan-Like Marine Exopolysaccharide for TGF-β1 Long-Term Protection.
    Zykwinska A, Marquis M, Godin M, Marchand L, Sinquin C, Garnier C, Jonchère C, Chédeville C, Le Visage C, Guicheux J, Colliec-Jouault S, Cuenot S.
    Mar Drugs. 2019 Jan 19;17(1). pii: E65. doi: 10.3390/md17010065